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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA5774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 327aa MW: 37085.3 Da PI: 6.7422 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Tp57577_TGAC_v2_mRNA5774 60 YSCSFCRREFRSAQALGGHMNVH 82 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.73E-6 | 57 | 86 | No hit | No description |
Pfam | PF13912 | 2.8E-5 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEQDQCWIQL QTKRKYSMSN SNLVNPSSSS CYGDSWEEQA FAEDAAGVSL GGCIWPPRSY 60 SCSFCRREFR SAQALGGHMN VHRKDRARLK ESSSSPQNEK ILYHHHHHHH ELDQNHLQKP 120 IIQSANSLAY NNLFPNSPLC GLVYKTNNPN YDLDHFVAST SSPSPSKALL RDETLIPFYD 180 SSIPHKMISP LNSSESWRNL SADDRLCSTN FQIEVDNIHE KVSKGIMDST FRGKGGNNDD 240 DESDVAMSLN LVLCRANPFV EFESTKKEED LNCKKRKKID YSTNLLFSKS SSFDRHQLMQ 300 ANMFELNPNS IDELDLELRL GTKSKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 55 | 82 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 55 | 82 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 277 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5774 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636682.1 | 1e-144 | zinc finger protein 10 | ||||
TrEMBL | A0A2K3NIR0 | 0.0 | A0A2K3NIR0_TRIPR; Putative transcriptional regulator RABBIT EARS-like protein | ||||
STRING | AES87103 | 1e-142 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 9e-26 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA5774 |