PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5629
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 504aa    MW: 55093.1 Da    PI: 8.4298
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5629genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11151207155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA5629 151 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 207
                               57*******************5444.2455536655.779999**************98 PP
2AP247.35.2e-15250301155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA5629 250 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 301
                               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-15151217IPR016177DNA-binding domain
PfamPF008473.6E-9151207IPR001471AP2/ERF domain
CDDcd000181.62E-19151217No hitNo description
Gene3DG3DSA:3.30.730.102.1E-12152216IPR001471AP2/ERF domain
SMARTSM003804.1E-23152221IPR001471AP2/ERF domain
PROSITE profilePS5103217.477152215IPR001471AP2/ERF domain
PRINTSPR003672.1E-6153164IPR001471AP2/ERF domain
CDDcd000186.83E-25250311No hitNo description
PfamPF008476.4E-10250301IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18250311IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18251310IPR001471AP2/ERF domain
SMARTSM003801.5E-33251315IPR001471AP2/ERF domain
PROSITE profilePS5103219.045251309IPR001471AP2/ERF domain
PRINTSPR003672.1E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDSSSSSPPT NTNNTSLAFS LSNTIIPSHS SSSSLFHSFT TFPSSTPQPL TLTGSNAVNT  60
SPDATDGGTT NLSIFTGGHK FEDFLGSTVT TTTATTCAPT QLHQFSTDLY DSELKKTISA  120
CFQGGYPAEP NSEPRKLSPK KTVDNFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS  180
RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPISNYE KELDDMKNMT RQEFVASLRR  240
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  300
GLNAVTNFDM SRYDVKSIAN SSLPIGGLSN KNNKISTDSS VSEIKRLEPI QSDERDHPSS  360
VSSTTTLSFA IPIKQDPSSD YWSNILGFHN TSNNNNNSSV VTTTPFNMDF STHASDNHDA  420
TFFSGSGILN VHQQNGNGNN SSSSASSSTS NSIPYATPIF SLNSNSNSNS SYDQNGNNWI  480
GHTIFQTHAK QPSLFQTPIF GME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610101.20.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-148AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2K3PFN50.0A0A2K3PFN5_TRIPR; Ap2-like ethylene-responsive transcription factor ail5-like protein
STRINGAES922980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-137AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]