PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5313

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 221aa MW: 24163.9 Da PI: 6.7972

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5313	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Tp57577_TGAC_v2_mRNA5313 66 FSCNYCKRKFFSSQALGGHQNAH 88 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-6	63	94	No hit	No description
PROSITE profile	PS50157	11.323	66	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MMIPNLNLEP ENQSEAPNDH LDSSMTLDLT LNFSSSDSEL KGSSDASSEV GAGEDQAAPN 60 ITPRVFSCNY CKRKFFSSQA LGGHQNAHKR ERTMAKRAMR MGMFTERYTS LASLPLHGSP 120 FRSLGVEAHS AMHQRSHVQP SSSMRAPDMR ASAKFDRNHF GSLVYVEDDD VGFFWPGSFR 180 QVDQGGGINI GHPQTSNSSF TPMEPPRPQA SASPDLTLKL *

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5313

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014631143.1	1e-116	zinc finger protein 4
Refseq	XP_014631144.1	1e-116	zinc finger protein 4
Refseq	XP_014631145.1	1e-116	zinc finger protein 4
Refseq	XP_028232573.1	1e-116	zinc finger protein 4-like
Refseq	XP_028232575.1	1e-116	zinc finger protein 4-like
Refseq	XP_028232576.1	1e-116	zinc finger protein 4-like
Swissprot	Q39263	3e-42	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2K3MUJ3	1e-160	A0A2K3MUJ3_TRIPR; Zinc finger protein 4-like
STRING	XP_004504582.1	1e-115	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-44	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5313

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]