PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5128
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 511aa    MW: 56601.2 Da    PI: 6.2769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5128genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00138198219
                              EETTTTEEESSHHHHHHH CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                              +C++Cgk F ++ ++  H
  Tp57577_TGAC_v2_mRNA5128 81 VCEHCGKEFFSWKSFLEH 98
                              6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-51335No hitNo description
SMARTSM003552.91335IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-41335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-57599No hitNo description
SMARTSM0035517080100IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.61E-8237260No hitNo description
PROSITE profilePS5015710.076238265IPR007087Zinc finger, C2H2
SMARTSM003550.13238260IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-9238262IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SuperFamilySSF576674.61E-8319346No hitNo description
PfamPF139124.0E-13323347IPR007087Zinc finger, C2H2
SMARTSM003550.51324346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681324346IPR007087Zinc finger, C2H2
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MALIVDQQSN FKHFCKICKK GFGCGRALGG HMRAHGIGDE TGQMDDDDPA SDWEGGNVPQ  60
TSNKRMYSLR TNPNKLKSCR VCEHCGKEFF SWKSFLEHGK CNSDDADEES LVSSPESDTM  120
ADDDDGVGGR RGCGWSKRKR SLRTKVGSYN NNFNCPSTEE EDLANCLMML SNAIVDPLEV  180
EPEESCASAS KDEERRNPMN FIAPLAYRIP YENNNTTTNN NNNNNNNNKA KGVAKGLFEC  240
KACKKVFNSH QALGGHRASH KKVKGCFAAR LDQNLDDNIV EDDAITHEEF FPSKSNTTLQ  300
YDQGTSNNPP TLMASSSKRK SKVHECSICH RSFSSGQALG GHKRCHWITS NAPDTSTLAR  360
FQQFQDHIEQ IPKFDNSSEP IDLKLDLNLP APTNAQIYLQ PPWGANASAT KDNIIKEDNN  420
SQCMNQQNQI NNNNNNNKNN NLVDQNNDNN NDNNKNNNLN TLVQNVDNED DKKAKLAKLS  480
ELKDVINIGG SSSPWLQVGI GATTDVRNDT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605324.20.0zinc finger protein ZAT1
TrEMBLA0A2Z6MDL80.0A0A2Z6MDL8_TRISU; Uncharacterized protein
STRINGAES875210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-24C2H2-like zinc finger protein