PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5023
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 357aa    MW: 39206.8 Da    PI: 8.0683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5023genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15273298126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +ktelC+ +++tGtC+yGd C+FaHg
  Tp57577_TGAC_v2_mRNA5023 273 FKTELCNKWQETGTCPYGDHCQFAHG 298
                               79***********************8 PP
2zf-CCCH18.34.1e-06311335125
                               --S---SGGGGTS.--TTTTT-SS-S CS
                   zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                               ykte Cr  ++ G  C+yG rC+F H
  Tp57577_TGAC_v2_mRNA5023 311 YKTEVCRMVLA-GvVCPYGHRCHFRH 335
                               9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-19268305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11269304IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004272300IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-8306340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11306339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803310338IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4310337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MHNKDVCSPS SKSGFGIGIN TAGRMQSNAG AFASLYSALT NENLPSLAGN CSNGGGVSLY  60
QYSDSGTEYD SCMIQKHQDM VNRHSMCLSR LVETSKEVEA LQKENGQLRA VNKELQKNLN  120
LLIQASLENR FGGGGSSGQT QSIPFDLMHG FHNLNLADGK ENCADWNSNN INNNNKELQE  180
GSDESPTSVI DNNGVETERF SLPKSISVRS NGYLKVAQPP AVTTTNTAVR TKGANRSRAS  240
STQASDTVQK VFVRGGQKEE EPLEMVVYNQ GMFKTELCNK WQETGTCPYG DHCQFAHGIG  300
ELRPVIRHPR YKTEVCRMVL AGVVCPYGHR CHFRHALTEQ EKALSQHKPR SMKLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22273339470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-107AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470126.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-82C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2Z6NFJ00.0A0A2Z6NFJ0_TRISU; Uncharacterized protein
STRINGXP_004497020.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-84C3H family protein