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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20394.4 Da PI: 8.6109 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.8 | 9.4e-69 | 7 | 161 | 6 | 169 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 +e+vCyv+CnfCntilav+vP++s++++vtvrCGhC++llsvn+ as + + +l ++ k+++ e+ +++ ++ ++ Tp57577_TGAC_v2_mRNA4784 7 GTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQAQKQHIILEEPSSK------EMGSS 85 589********************************************999999999988887777655443332......23333 PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+ ++++s ++ ++e pr+pp irP ekr rvPsaynrfikeeiqrika+nPdishreafs aaknWahfP+ihfg Tp57577_TGAC_v2_mRNA4784 86 SKCNKIAS--FEAVVEHEQPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKAGNPDISHREAFSSAAKNWAHFPHIHFG 161 33344444..34555678899999.9****************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-69 | 8 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.32E-7 | 107 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-4 | 116 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSMDMMGTER VCYVHCNFCN TILAVNVPYS SMLTIVTVRC GHCANLLSVN MVAASLQPFS 60 PPQLPQAQKQ HIILEEPSSK EMGSSSKCNK IASFEAVVEH EQPRIPPIRP IEKRHRVPSA 120 YNRFIKEEIQ RIKAGNPDIS HREAFSSAAK NWAHFPHIHF GKQQAKLDHG EGTHEKTNGF 180 Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4784 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572822.1 | 1e-112 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 1e-66 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1S3EAG3 | 1e-111 | A0A1S3EAG3_CICAR; putative axial regulator YABBY 2 | ||||
STRING | GLYMA12G10210.3 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-57 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4784 |
Publications ? help Back to Top | |||
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