PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4766
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 601aa    MW: 66988 Da    PI: 6.9102
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4766genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.3e-093423791954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Tp57577_TGAC_v2_mRNA4766 342 FEHflHPYPKDSDKVMLARQTGLTRSQVSNWFINARVR 379
                               554459******************************88 PP
2BELL117.27.7e-38206277172
                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               +rqelq+kk+kL+s+l+eVd rYkqy++q+q vissF+++ag+g+ak+YtslAlk+iS++Fr+Lkdai++qi
  Tp57577_TGAC_v2_mRNA4766 206 QRQELQMKKSKLVSMLDEVDIRYKQYHHQMQSVISSFQQAAGYGAAKSYTSLALKTISKQFRSLKDAISSQI 277
                               69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.6E-60131275IPR006563POX domain
PfamPF075261.2E-47136274IPR006563POX domain
PROSITE profilePS5007112.131320383IPR001356Homeobox domain
SMARTSM003891.0E-9323387IPR001356Homeobox domain
CDDcd000869.67E-12323384No hitNo description
SuperFamilySSF466895.99E-17324389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28326389IPR009057Homeodomain-like
PfamPF059206.8E-18340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MGTYFHGNSN SSEIQQPSAE GLQTLYLMNP NYVPYSQETQ NPTQNMLFAN PNATNNTSPH  60
ALNFVKFPHA PSSFNQHHLL GVTIPPSNFL GSNSADTPSQ QFEVTGFHPF ASLATAAHRP  120
HRGGGDNSGV SSMHSVVFGS KYLRVAQELL DEVVNVDKGI MKGESGEGDN SNNENKEKRK  180
ANIEASSSGG RENDGGKQVA ELSTAQRQEL QMKKSKLVSM LDEVDIRYKQ YHHQMQSVIS  240
SFQQAAGYGA AKSYTSLALK TISKQFRSLK DAISSQIKTT SKTLGEDDCL GVKLEGSRLR  300
FVDHHLRQQR ALQQLGMIQT NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKVMLAR  360
QTGLTRSQVS NWFINARVRL WKPMVEEMYL EETKEQEKNN NDSNDNTNIS KESSKELWSA  420
NTTTQDSTPT KLDQINILHS KTESFNNQNT SPTEISNSHN SLSTSNTKFD VDQTNHDKNE  480
YPLMSGNENH HGDGYGTFSM EDIGRFNVSD QLAPRFHGNG VSLTLGLPHN ENLPFSSTQH  540
GFLSQDLHMG GRIEMGENEN EFCAINTTPP SSHSGTSYES IDIQNRKRYA AAQLLRNFVN  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16329387563Homeobox protein Meis2
3k2a_B4e-16329387563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454581e-115AC145458.3 Cicer arietinum strain FLIP84-92C clone gl1-4n10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455732.10.0BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ561e-125BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A072UKZ20.0A0A072UKZ2_MEDTR; BEL1-related homeotic protein
STRINGGLYMA13G38910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-113BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]