PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4750
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 734aa    MW: 80080.4 Da    PI: 5.4417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4750genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2062117156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Tp57577_TGAC_v2_mRNA4750  62 RKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 117
                               789999***********************************************999 PP
2START221.62.4e-692504711206
                               HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                               ela +a++el+ +a+ ++p+W +       + +n+de++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ 
  Tp57577_TGAC_v2_mRNA4750 250 ELAVAAMEELIGMAQMGDPLWLSTTldgavTVLNEDEYVRSFPRGIGpkpngFKCEASRETSVVIMNHVNLVEILMDVN-QWSTV 333
                               57899*******************9*******************999********************************.***** PP

                               -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                     START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                               +a    +a+t+ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p+     R++++p
  Tp57577_TGAC_v2_mRNA4750 334 FAgivsRAMTVEVLSTGvagnynGALQVMTAEFQVPSPLVPtRETYFVRYCKQHTDGTWAVVDVSLDNLRPSPT----SRCRRRP 414
                               ***********************************************************************996....9****** PP

                               EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               Sg+li++++ng+skvtwvehv++++r +h+l+++lv++g+a+gak+wvatl+rqce+
  Tp57577_TGAC_v2_mRNA4750 415 SGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVATLDRQCER 471
                               *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2244117IPR009057Homeodomain-like
SuperFamilySSF466891.46E-1953119IPR009057Homeodomain-like
PROSITE profilePS5007117.08659119IPR001356Homeobox domain
SMARTSM003894.3E-2060123IPR001356Homeobox domain
CDDcd000861.79E-1961120No hitNo description
PfamPF000463.7E-1862117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
SuperFamilySSF559612.0E-35241473No hitNo description
PROSITE profilePS5084844.402241474IPR002913START domain
CDDcd088759.72E-130245470No hitNo description
SMARTSM002347.8E-64250471IPR002913START domain
PfamPF018527.1E-59251471IPR002913START domain
Gene3DG3DSA:3.30.530.208.5E-6339437IPR023393START-like domain
SuperFamilySSF559611.01E-25491724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MFQSNLLEAG QFHPLEMMQN TSESDVPRIR EDECFESATK SCSENHEGGA ASGDEQEPRP  60
KRKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH  120
ERSENSQLRA ENEKLRTDNM RYREALSNAS CPNCGGPTAI GEMSFDEHHL RLENGRLREE  180
IDRISAIAAK YVGKPVVNYS NISPSLPPRP EIGFVGNNQG IGGMEMYGTS GDILRSISGP  240
TEADKPIIIE LAVAAMEELI GMAQMGDPLW LSTTLDGAVT VLNEDEYVRS FPRGIGPKPN  300
GFKCEASRET SVVIMNHVNL VEILMDVNQW STVFAGIVSR AMTVEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRETYF VRYCKQHTDG TWAVVDVSLD NLRPSPTSRC RRRPSGCLIQ  420
EMPNGYSKVT WVEHVEVDDR GVHNLYKQLV STGHAFGAKR WVATLDRQCE RLASSMATNI  480
PTVDVGVITS QEGRKSMMKL AERMVISFCG GVSASTAHTW TTLSGTGADD VRVMTRKSVD  540
DPGRPPGIVL SAATSFWLPV PPKQVFDFLR DENSRNEWDI LSNGGVVQEM AHIANGRDTG  600
NCVSLLRVNS ANSSQSNMLI LQESLTDSTG SFVIYAPVDI VAMNVVLNGG DPDYVALLPS  660
GFAILPDGNA IGNGENGGQA AGGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV  720
ERIKASLSGE GAA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515074.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_004515075.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_012575640.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2K3P3R20.0A0A2K3P3R2_TRIPR; Homeobox-leucine zipper protein HDG2-like
STRINGXP_004515074.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2