PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4735
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 322aa    MW: 36291.7 Da    PI: 9.7446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4735genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.14.4e-29148853128
                       NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Tp57577_TGAC_v2_mRNA4735  14 QSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKS-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCV 88 
                               5689**************************************.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.4951112IPR003441NAC domain
PfamPF023651.0E-14387IPR003441NAC domain
SuperFamilySSF1019411.44E-3313111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
LINTCLKPAK SFIQSDNEWF FFSPRGRKYP NGSQSKRATD CGYWKATGKE RNVKSGSNVI  60
GTKRTLVFHL GRAPKGERTE WIMHEYCVSD RSPVGSNHRL NDSLVVCRLK RNTEFRVSDA  120
SNRASSSQVN PVHSHESDCA VSEGGIDDKR RICDHEQEKE VDGSSRRDSS SYGSPSMEQI  180
DSVSESNQRP ANDATLTDSS GQLKMDEEDC YAEILKNDII KLDESSMAQG AQTRQHDLAY  240
SHPCQGTAQR RIRLRVAKST HSQTGVRFSR TMHQSKSSFF AKMTNRLMIF AFFVFTLMAI  300
FFWSLLGGHK QLRNIVGKFR A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-26811163164NO APICAL MERISTEM PROTEIN
1ut4_B3e-26811163164NO APICAL MERISTEM PROTEIN
1ut7_A3e-26811163164NO APICAL MERISTEM PROTEIN
1ut7_B3e-26811163164NO APICAL MERISTEM PROTEIN
3swm_A3e-26811166167NAC domain-containing protein 19
3swm_B3e-26811166167NAC domain-containing protein 19
3swm_C3e-26811166167NAC domain-containing protein 19
3swm_D3e-26811166167NAC domain-containing protein 19
3swp_A3e-26811166167NAC domain-containing protein 19
3swp_B3e-26811166167NAC domain-containing protein 19
3swp_C3e-26811166167NAC domain-containing protein 19
3swp_D3e-26811166167NAC domain-containing protein 19
4dul_A3e-26811163164NAC domain-containing protein 19
4dul_B3e-26811163164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4735
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1463321e-123AC146332.47 Medicago truncatula clone mth2-7l17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631443.10.0NAC domain-containing protein 40
TrEMBLA0A2K3NI190.0A0A2K3NI19_TRIPR; NAC domain-containing protein (Fragment)
STRINGAES671080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.13e-55NAC domain containing protein 89