PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 31509 Da PI: 10.1009 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.6 | 3.9e-37 | 63 | 227 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s +sn+ Tp57577_TGAC_v2_mRNA4206 63 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsL--SVSLRGSNN 145 78**************************************************************9999976642..333333333 PP TCP 86 ssg..............................................................................k 89 s + + Tp57577_TGAC_v2_mRNA4206 146 SLPspsstslehkpllspspfilgkrirtdddsssssahakedalsvaslstpaalwalpsrpdfgqiwsfaaaaagapqpE 227 3334455566777777777777776666666555555555556666666666666666666666666666666666655432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-32 | 69 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 69 | 123 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKSSVPSFSI THSHTLSFSL HPSTTLIPSL HPSIHQNMSN TDGTTTTTTT NGSIIDQNRQ 60 HLAVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI 120 IAATGTGTTP ASFSSLSVSL RGSNNSLPSP SSTSLEHKPL LSPSPFILGK RIRTDDDSSS 180 SSAHAKEDAL SVASLSTPAA LWALPSRPDF GQIWSFAAAA AGAPQPEMVI QSLSQQQQQQ 240 HQASFFSHHH HQQQQAMGEA SAARVGNYLP GHLNLLASLS GGHGNSGRGD DEHH* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592726.1 | 1e-122 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-96 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2K3NXU1 | 0.0 | A0A2K3NXU1_TRIPR; Transcription factor TCP7-like protein | ||||
STRING | AES62977 | 1e-122 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4206 |