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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 90aa MW: 10381.9 Da PI: 8.1985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.5 | 4.7e-31 | 11 | 90 | 1 | 81 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp +++ +ekewyfFs+rd+ky++g+r+nra+ sg Tp57577_TGAC_v2_mRNA41860 11 LPPGFRFHPTDEELVMHYLCRKCTSQPIAV-PIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSG 90 79**************************99.88***************8777899*********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-36 | 5 | 90 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.08 | 11 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-13 | 12 | 87 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
LKKTMASELQ LPPGFRFHPT DEELVMHYLC RKCTSQPIAV PIIAEIDLYK YDPWDLPGMA 60 SYGEKEWYFF SPRDRKYPNG SRPNRAAGSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-45 | 2 | 90 | 6 | 94 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468234 | 7e-69 | CU468234.6 M.truncatula DNA sequence from clone MTH2-40I24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602038.1 | 4e-58 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 5e-53 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2K3N804 | 6e-57 | A0A2K3N804_TRIPR; NAC domain-containing protein | ||||
TrEMBL | A0A2Z6NYD5 | 6e-57 | A0A2Z6NYD5_TRISU; Uncharacterized protein | ||||
STRING | AES72289 | 2e-57 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-55 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41860 |