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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 43140.4 Da PI: 6.5777 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 8e-10 | 21 | 65 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d + +a + ++ + +W++Ia+ ++ g+t +++k+++ Tp57577_TGAC_v2_mRNA41117 21 EWSREQDIAFENALATYPEDasdRWEKIAADVP-GKTVEEIKEHYE 65 7********************************.**********95 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 8.9e-14 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Tp57577_TGAC_v2_mRNA41117 129 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 173 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.311 | 17 | 71 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-9 | 18 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.42E-11 | 20 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-5 | 21 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-8 | 21 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-9 | 21 | 68 | No hit | No description |
PROSITE profile | PS51294 | 18.172 | 121 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.65E-17 | 124 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-11 | 126 | 176 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.2E-17 | 126 | 176 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 4.74E-10 | 129 | 174 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-11 | 129 | 172 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-11 | 129 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
LKHFLFYNKT MAMDEVDSSS EWSREQDIAF ENALATYPED ASDRWEKIAA DVPGKTVEEI 60 KEHYELLVDD VSQIEAGCVP LPSYNSSSEG STGQASDEGV GGKKNGHNNE SNHGTKASRS 120 DQERRKGIAW TEEEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM 180 NKDRRRSSIH DITSVNNGDV STPQGPITGQ TNGSAGNSAS KSVKQISPST TGIPGSGIYA 240 APTIGQPVGG PLVSAVGTPV NLSAPPHMAY GIRAPVPGTV VPGAPMNMVP MTYPMPHSHT 300 STXXXXXXXX XXXXXXXXXX XXNVQKIEDL DCGLCSWCNS FSRQKLLFYL VACMHEFYSC 360 SVISEINYTR KRLNVCFNVG CYEMLQPCDI GSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-17 | 18 | 87 | 7 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41117 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135012 | 1e-140 | BT135012.1 Medicago truncatula clone JCVI-FLMt-16A6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513249.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_004513250.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-130 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S2Z1E0 | 0.0 | A0A1S2Z1E0_CICAR; transcription factor SRM1 | ||||
STRING | XP_004513249.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-124 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41117 |
Publications ? help Back to Top | |||
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