PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40793

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 100aa MW: 11615.9 Da PI: 11.0557

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40793	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	48.3	2.6e-15	1	30	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh+l efD++krsCrrrLa+hnerrrk+q+ Tp57577_TGAC_v2_mRNA40793 1 FHQLAEFDQGKRSCRRRLAGHNERRRKPQP 30 9**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.4E-4	1	15	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-12	1	33	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	14.511	1	28	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-8	1	27	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
FHQLAEFDQG KRSCRRRLAG HNERRRKPQP KSFLTSRFPK LSPYTLDNNG KGDNFLMDAS 60 YPKFSPRNVF QTPRTSEPIP GNQTTQITWQ QNNSTTPSDF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40793

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467649.1	7e-41	squamosa promoter-binding-like protein 15
TrEMBL	A0A072VJ94	2e-39	A0A072VJ94_MEDTR; Squamosa promoter-binding-like protein
TrEMBL	A0A396JX08	3e-40	A0A396JX08_MEDTR; Putative transcription factor SBP family
STRING	XP_007162307.1	4e-36	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4208	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-16	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40793