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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 41226.2 Da PI: 8.2023 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.6e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWk Tp57577_TGAC_v2_mRNA40277 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWK 96 79***************************9.89***************7777799***************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Tp57577_TGAC_v2_mRNA40277 97 ATGTDKIITN-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 ******9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.16E-66 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.233 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGIQEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGTRPNRVA GSGYWKATGT DKIITNEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL DSSRNNGGTK LDEWVLCRIY KKNSSALKTN PNGVVSSGEY 180 TQYSNGSSSS SSSHRDSNLD DVLESLPQID DRCFMLPRVN SLRTMQHHHQ QQEHKLNIQN 240 LNSANNNNFM DWSNPSLILN TQFQETQTQG MMNFGGCNDL YVPNVPTLCQ MDSSVITDKT 300 SKISVHPTEE EVQSGARANQ VENFNSGFLQ RGSNDFTQGM NFSNSVDPFG FRYPVQPVGF 360 GFGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00360 | DAP | Transfer from AT3G15500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40277 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137564 | 0.0 | BT137564.1 Medicago truncatula clone JCVI-FLMt-16H20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464754.1 | 0.0 | NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-132 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A2K3L364 | 0.0 | A0A2K3L364_TRIPR; NAC domain-containing protein | ||||
STRING | XP_004487680.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-119 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40277 |
Publications ? help Back to Top | |||
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