PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40213
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 431aa    MW: 47879 Da    PI: 5.7878
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40213genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073764092154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Tp57577_TGAC_v2_mRNA40213 376 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 409
                                469*****************************87 PP
2ELK27.57.1e-10330351122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELKh+L+++Y+++++++++E++
  Tp57577_TGAC_v2_mRNA40213 330 ELKHELKHGYKEKIVDIREEIL 351
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-20163207IPR005540KNOX1
PfamPF037901.3E-18165206IPR005540KNOX1
SMARTSM012562.6E-26216272IPR005541KNOX2
PfamPF037911.7E-20223271IPR005541KNOX2
PfamPF037893.3E-5330351IPR005539ELK domain
PROSITE profilePS512139.551330350IPR005539ELK domain
SMARTSM011880.0023330351IPR005539ELK domain
PROSITE profilePS5007111.726350413IPR001356Homeobox domain
SuperFamilySSF466894.71E-16352416IPR009057Homeodomain-like
SMARTSM003892.4E-11352417IPR001356Homeobox domain
CDDcd000862.14E-11353414No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25357414IPR009057Homeodomain-like
PfamPF059201.2E-17370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAYHNQHLSQ ELPPIHHFTD QTNNNNTFRS ILPDSPDPNS KPDSDPNQLQ TTPNWLNNAL  60
LRNHYTDNNN NDVTNDVNND NNVNGNGASN FLNLQTATDS AAVQNSGQWL SRSILHRHHG  120
EVIDDVSVSV GVGGGDELGD MKGEGIGGKG ETVVGDGGGG LMGRLKAEIM AHPLYEQLLS  180
AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSAFGQNIV GVDDKELDHF MSHYVLLLCS  240
FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSEDEDEQ VDSDANIFDG  300
SFDGGADNMG FGPLVPTENE RSLMERVRQE LKHELKHGYK EKIVDIREEI LRKRRAGKLP  360
GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV  420
LKTKRKRSQN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12353417872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406426RKRNWHSNPSSSTVLKTKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280580.0EF128058.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465816.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A0H3WB910.0A0A0H3WB91_PEA; Class II knotted-1-like 3 homeobox transcription factor
STRINGXP_004498766.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-174KNOTTED1-like homeobox gene 3