PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40136

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 240aa MW: 26922.2 Da PI: 8.8331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40136	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Tp57577_TGAC_v2_mRNA40136 84 FSCNYCQRKFYSSQALGGHQNAH 106 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.35E-6	81	111	No hit	No description
PROSITE profile	PS50157	11.427	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNHLNPKSYP SENLNFPYLE TSMDTKHKNE SSPQLVLDLS LSSKDSCDDE SKQELNLLNC 60 FHANLSESSS ESSLDPNELD PRVFSCNYCQ RKFYSSQALG GHQNAHKRER TLARRGYTTS 120 MPSSMSSYGL CNKSLGIQVH SMINKPCYQK PFFGFCSNGQ NGWKRQNFDS QPAIRKLPSG 180 NFHVRNETEP SFGSSISKVA MFPKGLVNEG FGSYLLDKST SHLKSKQEKL KNLDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40136

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003604205.2	1e-122	zinc finger protein 1
Refseq	XP_013454510.1	1e-122	zinc finger protein 1
TrEMBL	A0A2K3N626	1e-156	A0A2K3N626_TRIPR; Zinc finger protein 3-like
STRING	AES86402	1e-119	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	3e-32	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40136