PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39794
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 734aa    MW: 85337.1 Da    PI: 7.3942
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39794genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1492e-1552136291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                +Y++YA+ +GF ++k +s++  ++g  +  t+ C++  +  +++k+     +++++t  +Cka++++  + dgk  ++++ leH
  Tp57577_TGAC_v2_mRNA39794  52 YYKSYARCMGFGISKINSRNA-DDG-KKYFTLACNRARSYLKSSKN---LLKPNPTTPLQCKARVNLAVSLDGKITISRVALEH 130
                                9**************999888.344.6889*******999999888...899******************************** PP

                       FAR1  86 nHelap 91 
                                nHel+p
  Tp57577_TGAC_v2_mRNA39794 131 NHELCP 136
                                ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1251136IPR004330FAR1 DNA binding domain
PfamPF105515.6E-29243335IPR018289MULE transposase domain
PROSITE profilePS5096610.484526562IPR007527Zinc finger, SWIM-type
PfamPF044348.1E-7533559IPR007527Zinc finger, SWIM-type
SMARTSM005756.0E-5537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MIMEKRFTSS DQEESDHINE NGDDTQDTNI AHDDEEPKVG MTFSSEEEVT RYYKSYARCM  60
GFGISKINSR NADDGKKYFT LACNRARSYL KSSKNLLKPN PTTPLQCKAR VNLAVSLDGK  120
ITISRVALEH NHELCPTKSV SFRCNKNLDR HIERRLELNH ARINVNKNVR SMVDETNGYD  180
NLAFGRLRIG IEDAEAIQKY CFRMQNNNNQ FYYVMDVDDK RQLQNVFWAD ARCRAAYEYF  240
GDVITFDTTY LANNTPLVSF VGVNHHGQSV LLGCAVLSNE DTKTFSWLFT TLLECMHGRA  300
PNAIITHEDI PMKNVIEVVF PKARHRWCLW HLMKKVPEKL GRHSDYECII TFLHDAIYDS  360
STISDFMEKW GKMIEHYSLH DNEWLKGLFN ERHRWVPVYV RDTFWAGMSI IQRSERVNSF  420
FDEYVNSNTT LKQFVEQYDI MLKDKIEQES MADLDSFNTI MACKSHFGFE FQFQKAFTNE  480
KFKEFQIEIA SLMYCSAFLE RTEGLNSTFW VIESKIVYGR NQNKRFKVIF NEKDFEIKCS  540
CCLFEFKGIL CRHILCVLQL TSKTESVPSC YILSRWRKDI KRRHTLIKYG FDHLVGNVEL  600
QRVGKACNAF YEVASMGIHT EDDLSKVMNW IKDLKIELTC KQSSHVIIEE ESLFQNHVTK  660
IHDPIVAQRK GCPLSNRKDS NVDQIGKKTQ INSKKSSSGQ IQEEGLCPCR VQETENSXXX  720
XXXXXXXXXX XXX*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626806.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2Z6P9Q30.0A0A2Z6P9Q3_TRISU; Uncharacterized protein
STRINGXP_004496070.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-114FAR1 family protein