PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39693
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 334aa    MW: 37930.8 Da    PI: 6.6552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39693genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-1877126255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aaka+++a+  l+g
  Tp57577_TGAC_v2_mRNA39693  77 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAAKAYDRAATILYG 126
                                59****999.**********954...5*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-2077135IPR016177DNA-binding domain
CDDcd000181.35E-3077134No hitNo description
SMARTSM003802.0E-3877140IPR001471AP2/ERF domain
PROSITE profilePS5103221.94477134IPR001471AP2/ERF domain
PfamPF008471.2E-1177122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2977134IPR001471AP2/ERF domain
PRINTSPR003672.9E-107889IPR001471AP2/ERF domain
PRINTSPR003672.9E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSPLHHHLQ ETKPTANTDV TTTLSETSNN STDDSSSVQL LDNNNSTSTA NTNTNNNNNK  60
QNRKCKGKGG PDNNKFRYRG VRQRSWGKWV AEIREPRKRT RKWLGTFSTA EDAAKAYDRA  120
ATILYGSRAQ LNLQPSNNNS HNSSSSSSSS SSSRLISSNN TLRPLLPRPS GYSFTYPFTF  180
YNHFLHHNHH YNYNNNPHQE MVQLQQNQEY RHQQQLCHQD FEHASGDSGR SVISYQNHVH  240
GTKYVDEEEL HAQHVLNIQQ QNQMNNNNIQ NCVVESSLVG SSSFEGSSQN NNIDGTVVDP  300
DPVCDSMWPA LTNEEDYTTT SLWDYNDNFF FDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1978133359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39693
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447294e-95AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.
GenBankKM0472744e-95KM047274.1 Medicago truncatula cultivar Jemalong A17 ABI4 genetic marker genomic sequence.
GenBankKM0472754e-95KM047275.1 Medicago truncatula cultivar Jemalong A20 ABI4 genetic marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616666.11e-106ethylene-responsive transcription factor ABI4
TrEMBLA0A2K3LPP40.0A0A2K3LPP4_TRIPR; Ethylene-responsive transcription factor abi4-like protein
STRINGAES996241e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-32ERF family protein