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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 334aa MW: 37930.8 Da PI: 6.6552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7.1e-18 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aaka+++a+ l+g Tp57577_TGAC_v2_mRNA39693 77 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAAKAYDRAATILYG 126 59****999.**********954...5*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-20 | 77 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.35E-30 | 77 | 134 | No hit | No description |
SMART | SM00380 | 2.0E-38 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 77 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 77 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-29 | 77 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDSPLHHHLQ ETKPTANTDV TTTLSETSNN STDDSSSVQL LDNNNSTSTA NTNTNNNNNK 60 QNRKCKGKGG PDNNKFRYRG VRQRSWGKWV AEIREPRKRT RKWLGTFSTA EDAAKAYDRA 120 ATILYGSRAQ LNLQPSNNNS HNSSSSSSSS SSSRLISSNN TLRPLLPRPS GYSFTYPFTF 180 YNHFLHHNHH YNYNNNPHQE MVQLQQNQEY RHQQQLCHQD FEHASGDSGR SVISYQNHVH 240 GTKYVDEEEL HAQHVLNIQQ QNQMNNNNIQ NCVVESSLVG SSSFEGSSQN NNIDGTVVDP 300 DPVCDSMWPA LTNEEDYTTT SLWDYNDNFF FDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 78 | 133 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39693 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144729 | 4e-95 | AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence. | |||
GenBank | KM047274 | 4e-95 | KM047274.1 Medicago truncatula cultivar Jemalong A17 ABI4 genetic marker genomic sequence. | |||
GenBank | KM047275 | 4e-95 | KM047275.1 Medicago truncatula cultivar Jemalong A20 ABI4 genetic marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616666.1 | 1e-106 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A2K3LPP4 | 0.0 | A0A2K3LPP4_TRIPR; Ethylene-responsive transcription factor abi4-like protein | ||||
STRING | AES99624 | 1e-105 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8847 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39693 |