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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bZIP | ||||||||
Protein Properties | Length: 182aa MW: 20205.4 Da PI: 6.2669 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.6 | 9.7e-12 | 97 | 134 | 3 | 39 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 + k rr+++NReAAr+sR+RKka++++Le +vk ++ Tp57577_TGAC_v2_mRNA39573 97 DHKTLRRLAQNREAARKSRLRKKAYVQQLESsRVKLMQ 134 67899************************972444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-6 | 95 | 158 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.151 | 97 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.8E-8 | 98 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.83E-7 | 99 | 142 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-8 | 100 | 143 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 102 | 117 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MLMWQLRVDN IGSAEIASNG AGCSDAGQQQ LMYNKGIASL PLGVENWADS GMADNSQQTD 60 DTSTDIDTDD KNQSNRGKSE AHMVANSRDQ TKFRAEDHKT LRRLAQNREA ARKSRLRKKA 120 YVQQLESSRV KLMQLEQELQ RARQQGLYLA NPGDQGHSTV GNGNENAISC DFCFSVEFLF 180 M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39573 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574877.1 | 2e-68 | transcription factor TGA2.2 isoform X1 | ||||
Refseq | XP_028201497.1 | 2e-68 | transcription factor TGA2.2-like isoform X1 | ||||
Swissprot | Q41558 | 5e-37 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A0B2R0A3 | 4e-67 | A0A0B2R0A3_GLYSO; Transcription factor HBP-1b(C1) | ||||
TrEMBL | K7K7E4 | 4e-67 | K7K7E4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G10833.1 | 7e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15887 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.3 | 3e-23 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39573 |