PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39490
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 485aa    MW: 55463.7 Da    PI: 8.0439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.15.9e-52231521128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+++yL+ kv ++++  +  ++evd++++ePw+Lp+++k +ekewy Fs rd+ky+tg r+nrat +gyWk
  Tp57577_TGAC_v2_mRNA39490  23 LPPGFRFHPTDEELITFYLASKVFKNTFFNNVKFAEVDLNRCEPWELPEMAKMGEKEWYLFSLRDRKYPTGLRTNRATGAGYWK 106
                                79*************************777556***************988999****************************** PP

                        NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atgkdkev+s   +++l g+kktLvfykgrap+gekt+Wvmheyrl
  Tp57577_TGAC_v2_mRNA39490 107 ATGKDKEVYSCsnRSSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 152
                                *********97667778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6018180IPR003441NAC domain
PROSITE profilePS5100557.62223180IPR003441NAC domain
PfamPF023654.1E-2624152IPR003441NAC domain
PfamPF124811.9E-13382420IPR024286Domain of unknown function DUF3700
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMLTMEEVLC ELSEHEKKNE QGLPPGFRFH PTDEELITFY LASKVFKNTF FNNVKFAEVD  60
LNRCEPWELP EMAKMGEKEW YLFSLRDRKY PTGLRTNRAT GAGYWKATGK DKEVYSCSNR  120
SSLLGMKKTL VFYKGRAPRG EKTKWVMHEY RLDNHFSPSQ SHHHPHTCKE EWVICRIFHK  180
SGEKRNSILQ LQSGNANANY NLTSKKSCLP PPPHLITNPT SFTQLNQNDQ LISHSHNIFP  240
LQPFQPSFQI NHTCRNNNLL PSSELLFKSQ QNFNMKQTIP KSEATFYDQY QSSQSIDDAI  300
NLRWIENNNN NNNSSNNHNF ENTSSFPVEM DAELIEFSGA ATNAEFRDMS TSTNFNSRIG  360
LDDVPMGIDS WSQAQLVYTT IGCLFHSEHG LLNFEHPTKK MKAMPRIDSE GVMCGGNFNV  420
DSRSRNQMMP RVELKLIGLL GFGFGVFCSG FGVWGLTLRG LELRVWSLDC GGSRFKFCSL  480
KFGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-50141836171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633445.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A396J0D30.0A0A396J0D3_MEDTR; Putative transcription factor NAM family
STRINGAES741210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.15e-86NAC family protein