PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39264
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 197aa    MW: 22015.5 Da    PI: 4.7074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39264genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-152372255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                y GVr +k +g++v+eIr+p   gk+ r++lg++  +++Aa+a++ a+  l+g
  Tp57577_TGAC_v2_mRNA39264 23 SYIGVRKRK-WGKFVSEIREP---GKKSRIWLGSYEEPQMAAAAYDVAAFHLKG 72
                               699***999.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-92372IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-192381IPR016177DNA-binding domain
SMARTSM003807.2E-322386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-282381IPR001471AP2/ERF domain
PROSITE profilePS5103220.4552380IPR001471AP2/ERF domain
CDDcd000182.62E-172482No hitNo description
PRINTSPR003672.3E-102435IPR001471AP2/ERF domain
PRINTSPR003672.3E-106282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQESNSMHQE HVQIAPPTPT TTSYIGVRKR KWGKFVSEIR EPGKKSRIWL GSYEEPQMAA  60
AAYDVAAFHL KGRAARLNFP ELVEKLPMPS SSEAEDIRVA AQQAALQFKT RTLSRISSAS  120
GSEGGGNSDS NGNGNVVPSV RVGLSPSQIQ AINEFPFDSP KMFEFEYDES RMMFYDDNNV  180
LELSEWEEIQ YDSLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-152480360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610923.11e-85ethylene-responsive transcription factor ERF021
SwissprotQ9C9I23e-51ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2K3LS081e-138A0A2K3LS08_TRIPR; Ethylene-responsive transcription factor erf021-like protein
STRINGAES938816e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-47ERF family protein