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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA38567 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
NAC |
Protein Properties |
Length: 187aa MW: 21596.7 Da PI: 4.2932 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA38567 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 84.4 | 2.3e-26 | 9 | 116 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGf F+Ptdeel+ ++L k++ ++ +i++ + +++Pw+L k ++ ++ yfF++ ++nr+t++gyWk
Tp57577_TGAC_v2_mRNA38567 9 LPPGFYFSPTDEELILHFLYSKASLPYHPN--IIPH--LSQHHPWELYGKSLSSGNQHYFFTEV--------KENRSTENGYWK 80
79********************99888666..6776..899******966667789999*9986........45899******* PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ g +k++ + g+kk Lvf g +g++t+Wvm+ey++
Tp57577_TGAC_v2_mRNA38567 81 EIGVTKPINN-----LGMKKYLVFILG---EGTETNWVMEEYHI 116
********98.....9*********65...5667********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MGSESSVNLP PGFYFSPTDE ELILHFLYSK ASLPYHPNII PHLSQHHPWE LYGKSLSSGN 60 QHYFFTEVKE NRSTENGYWK EIGVTKPINN LGMKKYLVFI LGEGTETNWV MEEYHISSYE 120 SRRSQNQDES WSKWVLCKVY EKNVSQEGAS YSDEDIDDNG TEVSWLDEVF MSLDDDDLDQ 180 TSLPNY*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC122164 | 2e-73 | AC122164.6 Medicago truncatula clone mth2-24h4, complete sequence. |