PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38521
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 321aa    MW: 36364.6 Da    PI: 10.1675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38521genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014133151523
                                TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 C++ Fs++s+L+ H+++H
  Tp57577_TGAC_v2_mRNA38521 133 SCNRQFSSSSTLRGHQKSH 151
                                5****************99 PP
2zf-C2H215.16.6e-05219241123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C+++Fs+   L  H ++H
  Tp57577_TGAC_v2_mRNA38521 219 FSCKICNRTFSSARALGGHKKVH 241
                                89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.074769IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-64770IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7414774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097129156IPR007087Zinc finger, C2H2
SMARTSM0035569129151IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.2E-8131151No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4131155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.071133153IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-8214241No hitNo description
SMARTSM003550.0054219241IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-7219243IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKGKKVKSEQ SQSSNSKMPL NINHAKNDLI CGSRVQKHEF CTPSMTFSCI ICQKQFASKK  60
ALGGHKKAHK ADQQKNNKVV SMKEKKLVRS EQYHPSSSKM PIYIDLTKND YIRGPVGQKY  120
DFLTPLETLS FNSCNRQFSS SSTLRGHQKS HKREREIHDQ ENNNYKKVVT MKGKEVVKSE  180
QHQPSNSVML IPFINLTNND LICGWKVQEH GIFTPSKTFS CKICNRTFSS ARALGGHKKV  240
HKRKLTLAKH PQEMENFSSI HGFKIEDNSI KLEDNVGESS INVDMKSNSI LHKSTVVATC  300
GDYHHTIKEE AFELDLSLKL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244KKVHKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38521
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3MFF00.0A0A2K3MFF0_TRIPR; Zinc finger protein 4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-10C2H2 family protein