PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3844
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 235aa    MW: 27117.6 Da    PI: 7.8594
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3844genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35231132101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y ++ed++++++isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F
  Tp57577_TGAC_v2_mRNA3844  23 FLLKTYMLVEDPATDDVISWNEEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFCNEKF 98 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                               kkg++ell++i+r++
  Tp57577_TGAC_v2_mRNA3844  99 KKGERELLSEIRRRR 113
                               *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-5219112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3720112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.15E-3320112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGVVISEKG LLECGRKCTP SPFLLKTYML VEDPATDDVI SWNEEGTAFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATNR WEFCNEKFKK GERELLSEIR RRRAWSNNKQ  120
HHTIQNQDSD EDQRSSSTSS SSGYINLVDE NKRLKKENAV LNSELTSMKW KCKELVDLVS  180
IYNQKKEEDE ANENDKRPML FGVRLDVQQG DRRIKRNIAE IGENASILLS QSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-202311220120Heat shock factor protein 1
5d5u_B3e-202311229129Heat shock factor protein 1
5d5v_B3e-202311229129Heat shock factor protein 1
5d5v_D3e-202311229129Heat shock factor protein 1
5d5w_B2e-20211122104Putative transcription factor
5d5x_B2e-20211122104Putative transcription factor
5d5x_E2e-20211122104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2368351e-134AC236835.2 Medicago truncatula strain A17 clone mte1-66f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625136.11e-146heat stress transcription factor B-3
SwissprotO222305e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2Z6NEB11e-154A0A2Z6NEB1_TRISU; Uncharacterized protein
STRINGAES813541e-146(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-60heat shock transcription factor B3