PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA38389

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 290aa MW: 32342.8 Da PI: 8.8512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA38389	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k Fs++ L H++ H Tp57577_TGAC_v2_mRNA38389 100 FSCSFCRKQFSTSQALGGHQNAH 122 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.86E-7	96	127	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-5	96	126	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.759	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MASTSEQSST TSEGISQKSC EEENNINNKG KEVVQCQQHQ PSNSIKLSKD DSIRGSKVQE 60 RDFVTHTKNL EVGSSSLGWA NNKTNKEKNT GNKSSDSKNF SCSFCRKQFS TSQALGGHQN 120 AHKRERALAK HRQEMHNGFG IPRHPFPYYT NYPSLSSSYY GFGSFNKALG IRMESMIHKP 180 SYSLTPPPYK FGSTPTWAPM QEMRNFSSMQ EMRNFSSLGE LKIEGLNTSN GSSATPTWRN 240 NVIKLDNIGE SSINVIKSNM VVTDNDQHGM RKEEDSDSES TELDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA38389

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487223.1	1e-85	zinc finger protein 1-like
TrEMBL	A0A2K3LN06	0.0	A0A2K3LN06_TRIPR; Zinc finger protein
STRING	XP_004487223.1	5e-85	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA38389