PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3833
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 321aa    MW: 37094.6 Da    PI: 7.3972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3833genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-081446132
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                              rg+W++eEd +l+ +++q+G+g +W + ++++g
  Tp57577_TGAC_v2_mRNA3833 14 RGPWSPEEDSKLKSYIQQYGTGgNWIALPSKIG 46
                              89*********************9987777766 PP
2Myb_DNA-binding40.18.4e-13100142246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA3833 100 GSFSEEEDNIICSLYVNIGSR-WSVIAAQLP-GRTDNDIKNYWNT 142
                               78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-6846IPR009057Homeodomain-like
PROSITE profilePS500909.535993IPR017877Myb-like domain
SMARTSM007171.4E-81395IPR001005SANT/Myb domain
PfamPF002492.7E-61446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221547IPR009057Homeodomain-like
CDDcd001679.65E-61693No hitNo description
SuperFamilySSF466893.54E-2179150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2280100IPR009057Homeodomain-like
PROSITE profilePS5129421.48494148IPR017930Myb domain
SMARTSM007172.0E-1198146IPR001005SANT/Myb domain
PfamPF002491.2E-11100142IPR001005SANT/Myb domain
CDDcd001672.14E-7101141No hitNo description
Gene3DG3DSA:1.10.10.602.7E-24101148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIQ QYGTGGNWIA LPSKIGMYFY YYIFIWFQNS  60
KFFHVVETLI NFCILVGLKR CGKSCRLRWL NYLRPNLKHG SFSEEEDNII CSLYVNIGSR  120
WSVIAAQLPG RTDNDIKNYW NTKLKKKLQT KQKKDQQSQT RRAFRLNQEI KRENGNLVLP  180
NEVINISQTP NYLQTEHYSF PNPSFIQNYN LKEIEFSDNH QLQGINSQYP CDIYFQQDQL  240
SYDPSTINNI NSAGLAYVNH QQTDGSTKID SGANSTFIES SNWGDISSLV SDYEGCHQQT  300
MIQEDVTFDE SMFYGMIQTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21141507110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3833
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457512.11e-144transcription factor RAX3 isoform X1
TrEMBLA0A072UR621e-143A0A072UR62_MEDTR; Myb transcription factor
STRINGXP_004509047.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-67myb domain protein 84