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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 645aa MW: 72414.4 Da PI: 7.0157 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37 | 8.2e-12 | 290 | 359 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..........kr...krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ k lg ++ +e+Aa+a+++a++k++g Tp57577_TGAC_v2_mRNA3822 290 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsrkgrqgknVTihsKILILGGYDMEEKAARAYDQAALKYWG 359 78*******************9888833456688886611568*************************98 PP | |||||||
2 | AP2 | 36.1 | 1.7e-11 | 417 | 462 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Tp57577_TGAC_v2_mRNA3822 417 YRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 462 78999*******988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-17 | 290 | 367 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-13 | 290 | 369 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 290 | 359 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.726 | 291 | 367 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-23 | 291 | 373 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-14 | 291 | 368 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-5 | 292 | 303 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-5 | 349 | 369 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.87E-23 | 402 | 472 | No hit | No description |
SMART | SM00380 | 4.1E-27 | 403 | 476 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.479 | 403 | 470 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-6 | 417 | 462 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-14 | 418 | 470 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-16 | 418 | 470 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MKSMMENDDE SVDINNENNW LGFSLSPQMN NQSQHSSSSS ASEIVPLSSS FYNSTPLSNY 60 CFSYGLEHEN NVGLYSLLPI MPLKSDGSLY EMPPQTQAMT PKLENFLGNE AMETPHYACT 120 STTVTETMPL SLDSMFQNQV QHMNNQQQLS YYDLMLEGSK QNQNSSGNFH VSNLGEDNGL 180 SGLKNWVLRN FPASHGHDNS KMIVPVVVDE NVGESCSNIG SMAYGDLHSL SLSMSPSSQS 240 SCVTTSQNMS SAVIDNNSVA IDTKKRGNEK IEQKQIVHRK SIDTFGQRTS QYRGVTRHRW 300 TGRYEAHLWD NSCKKEGQSR KGRQGKNVTI HSKILILGGY DMEEKAARAY DQAALKYWGP 360 STHINFPLEN YQNQLEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRS YRLLITYRHH 420 QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGANAVTNFD IVKYDVEKIM 480 ASSNLLSIEF ARRNKEVVDT TQHIDQNKPN SSAYDNNTQE AILMQKNMVL YQSSQQQNQP 540 RIENERTHQS FSSVSFDNMF HQEVVEEASK MRTHVSNASS LATSLSSSRE GSPDRTSLQN 600 LSGIMPSTAS KLLVTNAPNS NVNSWDPSLH LRTQMPVFAA WTDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3822 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636092.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-144 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A396IBY7 | 0.0 | A0A396IBY7_MEDTR; Putative transcription factor AP2-EREBP family | ||||
STRING | AES90761 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-121 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3822 |