 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA38206 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
AP2 |
| Protein Properties |
Length: 495aa MW: 54868.5 Da PI: 6.6762 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA38206 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 34.9 | 3.7e-11 | 151 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d+ g k + f+ta Aa+a+++a+ k++g
Tp57577_TGAC_v2_mRNA38206 151 SQYRGVTFYRRTGRWESHIWDC---GkqvyLGeKATQHRGFDTAHAAARAYDRAAIKFRG 207
78*******************5...22322114555555699999************997 PP
|
| 2 | AP2 | 40.2 | 8.6e-13 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g
Tp57577_TGAC_v2_mRNA38206 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDKAAIKCNG 300
89********.7******5553..2.26**********99**********99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 495 aa
Download sequence Send
to blast |
MLDLNLNAHS AFDNYTFPLS SATAQMESSG SFDSSVINTA DTEDSSSYGD AYAYNFAILN 60
NNTNNNSSVE NGSISGELQV QHSGAGESGV RTIQLFPANE SGLISPSENR GWMKMNFPSD 120
HHGGVPEHTV VVAPRPQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGE 180
KATQHRGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYD EDIKQMSNFT KEEFVHILRR 240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIDAARA YDKAAIKCNG 300
REAVTNFEAS TYEGELISHC DNADSKQNLD LNLAIAPPSN SDVQMMNMQH NGSGLQVQRS 360
WDDMPVDKSV MFEDSGSRSV NVQSPYGFSI ASENQPPVWS GSNYFPMCKE RAIENRMESS 420
PVPNWAWQLQ SPYNNGSTLI PPNFSAAASS GFPSNTTIPS AADSQIHFAN MNFHPHFPPQ 480
MTNSSTIPPF YCRS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010291 | 2e-48 | AP010291.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT58D09, TM2058, complete sequence. |
