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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA3802 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
HD-ZIP |
Protein Properties |
Length: 280aa MW: 30887.5 Da PI: 7.8047 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA3802 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.8 | 1e-19 | 128 | 182 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q Lee F+++++++ ++++ LA++l+Lt rqV vWFqNrRa+ k
Tp57577_TGAC_v2_mRNA3802 128 RKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTK 182
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 127.3 | 6.6e-41 | 128 | 217 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
+kk+rl+k+q+++LEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+
Tp57577_TGAC_v2_mRNA3802 128 RKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQ 212
69*********************************************************************************** PP
HD-ZIP_I/II 86 eLreel 91
eL+ +l
Tp57577_TGAC_v2_mRNA3802 213 ELK-AL 217
**9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009735 | Biological Process | response to cytokinin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MGLNNQDASN NPSLQLILGL ALTLTKQDTP PSSNNVVTKP YSSSNNNNYE TEPSLTLGLS 60 TKSYYEEPLE FSTQTNSPHH SVVSASFSSG RVKRERDVSS ELEMETTEIE RVSSRISDED 120 EDGATAARKK LRLTKDQSAM LEESFKQHST LNPKQKQALA RELNLTPRQV EVWFQNRRAR 180 TKLKQTEVDC EFLKKCCETL TDENRRLQKE VQELKALKLA QPLYMPMPAA TLSMCPSCER 240 LGGGGGGGGV NGGSSNKNNF SMAPKPHFYN PFTNSSAAC*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 176 | 184 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |