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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15274.5 Da PI: 9.0656 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F++ L H +H Tp57577_TGAC_v2_mRNA3793 94 FNCDKCGKMFRSYQALGGHKAKH 116 78***********9999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.71 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.3E-9 | 8 | 29 | No hit | No description |
Pfam | PF13912 | 6.4E-5 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.3E-9 | 89 | 116 | No hit | No description |
Pfam | PF13912 | 5.1E-12 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEKNNGKACG ICGKWFPSAK SIGGHMRSHL VLLPIPPKFE ANNQAMDNPI HHPNQRASPL 60 DCLSPENAAK TLIMMSKETV KGDSLAQVNS QARFNCDKCG KMFRSYQALG GHKAKHRKID 120 PDLLADTVDT LERSEFKD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3793 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636235.1 | 9e-20 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2K3PMW0 | 3e-99 | A0A2K3PMW0_TRIPR; Zinc finger family protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15389 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 6e-11 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3793 |