PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37893
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 1512aa    MW: 165565 Da    PI: 6.4454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37893genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-10703744346
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +WT+eE+e++++ ++ +G++ +++Ia  ++ ++t  +c+++++k
  Tp57577_TGAC_v2_mRNA37893 703 PWTAEEQEIFLEKFAAYGKD-FRKIATFLN-HKTTADCVEFYYK 744
                                8*****************99.*********.***********98 PP
2Myb_DNA-binding262.1e-08921961446
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                W+  E   +++av ++G++ ++ Ia+++  +R+ +qck ++ k
  Tp57577_TGAC_v2_mRNA37893 921 WSDVEKAAFLHAVSLFGKD-FAMIAQRVR-TRSQYQCKVFFSK 961
                                *****************99.*********.********88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.64E-14692747IPR009057Homeodomain-like
PROSITE profilePS5129316.556699750IPR017884SANT domain
SMARTSM007171.3E-10700748IPR001005SANT/Myb domain
PfamPF002494.0E-8702744IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-6703744IPR009057Homeodomain-like
PROSITE profilePS5129312.501916967IPR017884SANT domain
SMARTSM007176.1E-7917965IPR001005SANT/Myb domain
SuperFamilySSF466894.06E-9919967IPR009057Homeodomain-like
PfamPF002493.3E-6920959IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-5920965IPR009057Homeodomain-like
CDDcd001676.89E-5921959No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1512 aa     Download sequence    Send to blast
MSLEPLDRKS SFRERKRHES SESFGSVARW RGSSNYNRSR EFNRGGDYRR VGGHRKQGSW  60
QLFPEESGHR HMISRSCDRR LEEDNYRPSF SRGDGNYGRG NKESRGAFSQ REWRGRSSET  120
TNNSLNMSRR QTNASNDRKS VDDMLTYSSH SHSDLVNTWE QHNMKDQHDK MGGVNRFVTG  180
QRNDRDSSLG TIDWKPLKWT RPGCSTSRDS GFSRSSGMRS LGGTNSKGSC EWKVGLQQKI  240
ATAVESNSGE AATCRASSAP SEEENLRKKP RLNWGEGLAK FERKHVEGPE VTSNNDDPVS  300
PPFSMETNNF LSTGLVDRSP KVSGLSECAS PVTPSSAARS SSPAGADDKL FGKAANVDSD  360
VGNLSSSPVP GSQNHLQMFS FNLEKVDIDS LISLGSPLVE LLPQSDNLNS VDYSLLISTT  420
MDKLLILKAD ISKVLEVTET EIDLLENELR SLKSESKDRF QCSEEAVGSL LIPCTYRHVA  480
NVSACGDSNS SLEVKDSVDV KSSASTGDIL YNTIISCNEK TAKAACEVFD KLLPEKCCKN  540
ENIGASSGSS SHNGTLIKEK FAERRRLARL KERIITLKFK ALHHLWKEDM RLLSIRKHRP  600
KSHKKLESEL RTTSNSHQKK RSSIPFRFPF PAGNQLKLVP TSEMIKYTSQ LLSESKHEIH  660
RSTLKMPALI WDQKDKMYSM FSSSNGLVVD PVAIEKERAM INPWTAEEQE IFLEKFAAYG  720
KDFRKIATFL NHKTTADCVE FYYKNHKSDC FEKIKKRDDD KLGKFFKAKT DLMASGVKCN  780
SGVNASSLDI LSEASSVMAD DIARDRKMRS GSSLWRGYNN HNKSRGDNII TERPDSFDVL  840
QDERETVAAD VLASICGCVL SEATSSCITS SVDPVKGKRV VKKCVKVKPL SKKPPMPEIT  900
QNIDHETCSD ESCGEMELTD WSDVEKAAFL HAVSLFGKDF AMIAQRVRTR SQYQCKVFFS  960
KTQKRLRLNH MGDRPENVGS QMNDDVDGGR SDADNACVVE TGSANGSDSS GTKTGVDQPE  1020
SDKNMYHDES NPVEASNLSA DLYTSEEINR KVDHEDVNMV SNVCVIGGES KLRTDDIVGV  1080
LNGSDRSGSV REQRAIVMSD GIEIGTNEPI EGGGGAVTEL VSGTGTMEPC YSNSVAEGRL  1140
VADVSSAQQG NKLEGSTICL VDRDEADTDA VIELKGNVRD SSTLVNTSLS SVDVSCPRLS  1200
VEAENEPQIC LEKPQFSGSS EVPLTDSTTS TLQYTDGAAM QSKKPSSQDL SSCDFQGNQD  1260
MIGHDSSSNL GHQLCNPGKS LDHVEAARVL QCYNLQAPSE KEVNVKMSCS SSATELPLLS  1320
QKIDLEEPPR NDVKIFGKIL TIPSSTPKPN LSAKGNEENG THLPKLSSGS SSLKLTGHDN  1380
TGGKSTILNV DLNDCRVFQN VPVIRSYSDG NKIQPVFSSL PDSAILLAKY PAAFGSYGLE  1440
AVSSLQQQVT EMVSSNGIGE PGILAGGSKS VASDPIAAIK THQTNADQFV GQTGNAIKDG  1500
EPVGEEKDLN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-15661752494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-15661752494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267283KKPRLNWGEGLAKFERK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37893
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489929.10.0uncharacterized protein LOC101505283 isoform X1
RefseqXP_004489930.10.0uncharacterized protein LOC101505283 isoform X1
TrEMBLA0A2K3NLR70.0A0A2K3NLR7_TRIPR; Nuclear receptor corepressor
STRINGXP_004489929.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-85MYB family protein