PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3783
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24670.8 Da    PI: 9.31
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3783genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.1e-262776150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ ++ifs +gklye +
  Tp57577_TGAC_v2_mRNA3783 27 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELA 76
                              79*********************************************965 PP
2K-box61.43.7e-211111891896
                     K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                               ++e++ +k+eie+Lq+ +R l G +L+++ + eLq Le++Le  + ++Rs K++++ e+i+ l+ ke  l+ +n++L+ 
  Tp57577_TGAC_v2_mRNA3783 111 KEEANVIKQEIETLQKGIRYLFGGGLGTMAMDELQVLEKNLEIWMYHVRSMKMNIMSEEIQALRDKEGTLKAANRYLHD 189
                               799**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-351978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.1371979IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-281993IPR002100Transcription factor, MADS-box
CDDcd002655.83E-402094No hitNo description
PRINTSPR004049.7E-282141IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PfamPF003191.8E-232874IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-284156IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-285677IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.072107197IPR002487Transcription factor, K-box
PfamPF014861.2E-21110189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
LFAATTSKLT NSSSSKINMA RGKVQLKRIE NPVHRQVTFC KRRAGLLKKA KELSVLCDAE  60
IGLVIFSAHG KLYELATKGS MQGLIEKYLK FTRGTQPEAI TEPHPLVMDA KEEANVIKQE  120
IETLQKGIRY LFGGGLGTMA MDELQVLEKN LEIWMYHVRS MKMNIMSEEI QALRDKEGTL  180
KAANRYLHDL VLENTSVTNF VPLVDTSYPL IIQDGIFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-1719104176MEF2 CHIMERA
6byy_B5e-1719104176MEF2 CHIMERA
6byy_C5e-1719104176MEF2 CHIMERA
6byy_D5e-1719104176MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3783
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455351.11e-135agamous-like MADS-box protein AGL12 isoform X1
SwissprotQ388416e-75AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A072UIB81e-134A0A072UIB8_MEDTR; MADS-box transcription factor
STRINGXP_004514527.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-77AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]