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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | EIL | ||||||||
Protein Properties | Length: 118aa MW: 13914.2 Da PI: 9.1252 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 93 | 6.6e-29 | 1 | 96 | 164 | 253 |
TTT--HHHH---S--HHHHHHT--TT--...-----GGG--HH....HHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SH CS EIN3 164 lekgvepPWWPtGkelwwgelglskdqg..tppykkphdlkka....wkvsvLtavikhmsptieeirelerqskylqdkmsak 241 lekg +pP WPtGke ww+e+g+s+dq +ppykkp dlkka wkv v a ikhms +ie+i++ +r+sk lqdk +ak Tp57577_TGAC_v2_mRNA37588 1 LEKGDQPPLWPTGKEIWWNEMGISEDQDlgPPPYKKPLDLKKAwkkaWKVCVWMAIIKHMSTDIEKIKNIVRNSKTLQDKHTAK 84 79*************************999**********875222278*********************************** PP HHHHHHHHHTTT CS EIN3 242 esfallsvlnqe 253 e+ ++ v+n+ Tp57577_TGAC_v2_mRNA37588 85 ETTNWIVVINHM 96 ******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 8.1E-28 | 1 | 95 | No hit | No description |
SuperFamily | SSF116768 | 1.24E-25 | 1 | 95 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene3D | G3DSA:1.10.3180.10 | 7.0E-30 | 1 | 96 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
LEKGDQPPLW PTGKEIWWNE MGISEDQDLG PPPYKKPLDL KKAWKKAWKV CVWMAIIKHM 60 STDIEKIKNI VRNSKTLQDK HTAKETTNWI VVINHMDCGF LRAREKNFEF EVVYGYVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 6e-30 | 1 | 95 | 34 | 122 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 6e-30 | 1 | 95 | 34 | 122 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:30002253}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37588 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:19798512}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198090.1 | 6e-32 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | Q8W3M0 | 1e-32 | EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b | ||||
TrEMBL | A0A2K3MD68 | 2e-32 | A0A2K3MD68_TRIPR; Ethylene insensitive 3-like protein (Fragment) | ||||
STRING | TRIUR3_26675-P1 | 1e-31 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 2e-20 | EIL family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37588 |
Publications ? help Back to Top | |||
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