![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA37386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 118aa MW: 14109.7 Da PI: 10.8969 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.5 | 3.7e-21 | 8 | 86 | 58 | 128 |
NAM 58 wyfFskrdkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v+ +++l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Tp57577_TGAC_v2_mRNA37386 8 RHFFHRPSKAYTTGTRKRRKVHsdhedgsETRWHKTGKTRPVYY-NSKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 86 49*****************8444455444778************.999***********6657999999**********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.84 | 1 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.2E-19 | 4 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-8 | 9 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
VSKDGLIRHF FHRPSKAYTT GTRKRRKVHS DHEDGSETRW HKTGKTRPVY YNSKLKGYKK 60 ILVLYTNYGK QRKPEKTNWV MHQYHLGXXX XXXXXXXXXX XCVQSFLSNS TKTMWWW* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456684.1 | 3e-56 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 7e-47 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A072UXW5 | 7e-55 | A0A072UXW5_MEDTR; NAC transcription factor-like protein | ||||
STRING | GLYMA12G13710.1 | 5e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19879 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 3e-49 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA37386 |
Publications ? help Back to Top | |||
---|---|---|---|
|