PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | SRS | ||||||||
Protein Properties | Length: 318aa MW: 34390.7 Da PI: 8.4913 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 182 | 2.4e-56 | 113 | 275 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.kskkqsals 87 + C dCGn+akkdC+++RCRtCCk rgfdC+thvkstWvpa+ rr+r+ la + ++ ++ +kr+r l +s++++a+s Tp57577_TGAC_v2_mRNA37240 113 KVCLDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWVPASLRRDRKMVLAETGYSDGGGGgVSSGTKRQRILvSSSHNAATS 196 57*********************************************8888877665555443788888888874222333333 PP DUF702 88 stkls.saeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ s a+ + +l+++s lP+ v+++avf+c rvs++ +ge+elaY ++v+i+GhvfkG+LydqG+++ Tp57577_TGAC_v2_mRNA37240 197 HSSSSiAATRSLSLDITSschqdarfkqsLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGIDA 275 32222033344455555578889999999***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-53 | 114 | 274 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.9E-25 | 114 | 155 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.4E-23 | 226 | 273 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MNMLGLRDLV LIAQTPSSLH NQQNQPISSD HHPNLPLPSS SSSALSVGLG IFPLLTTTTP 60 PHHQDSNFWN LKMCQPQQVM IMNSTSKRVE EKEDEKIKNL MIEENSNGGD EFKVCLDCGN 120 RAKKDCSFKR CRTCCKGRGF DCSTHVKSTW VPASLRRDRK MVLAETGYSD GGGGGVSSGT 180 KRQRILVSSS HNAATSHSSS SIAATRSLSL DITSSCHQDA RFKQSLPRYV RAPAVFKCHR 240 VSAIGNGEDE LAYLATVNIS GHVFKGFLYD QGIDAKNETK PCVSELQLGS NGSGKSYREC 300 SSSAIEVPTS AYPASAC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37240 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627845.1 | 1e-177 | protein LATERAL ROOT PRIMORDIUM 1 isoform X2 | ||||
Refseq | XP_024628230.1 | 1e-177 | protein LATERAL ROOT PRIMORDIUM 1 isoform X2 | ||||
TrEMBL | A0A2K3PM19 | 0.0 | A0A2K3PM19_TRIPR; Short internode related sequence | ||||
STRING | AET02321 | 1e-176 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-46 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37240 |