PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36841

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 132aa MW: 14485.1 Da PI: 6.5024

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36841	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.4	1.8e-17	12	80	27	96
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +++fa+vhk+F a+nv+kll++++++++++a++++ yeA+ r++d vyG v++il+lqqq++ ++ e+++ Tp57577_TGAC_v2_mRNA36841 12 AASFAAVHKVFDANNVSKLLSNVSTNHHHEAVATISYEAQTRLSDQVYGYVSTILALQQQVAAKA-EISM 80 789*********************************************************98654.5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.146	1	85	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-18	10	77	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MQEQHKSIEQ GAASFAAVHK VFDANNVSKL LSNVSTNHHH EAVATISYEA QTRLSDQVYG 60 YVSTILALQQ QVAAKAEISM IETELMKRGF TCENALQTTP QQQPQMLHQP NFNVAVQPVY 120 SNNSYGCTNT S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-14	15	87	40	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-14	15	87	40	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36841

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451538.1	6e-43	LOB domain-containing protein 20
Swissprot	Q9SRV3	4e-28	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A2K3NLV7	5e-85	A0A2K3NLV7_TRIPR; LOB domain-containing protein 20-like
STRING	XP_004489657.1	2e-41	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-30	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36841