PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36663
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 276aa    MW: 31199.9 Da    PI: 8.1605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19139172134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Tp57577_TGAC_v2_mRNA36663 139 CSDCHTTKTPLWRSGPTGPKSLCNACGIRQRKAR 172
                                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-19133184IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-13135172No hitNo description
PROSITE profilePS5011412.73137169IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-16137172IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.18E-13138166No hitNo description
PROSITE patternPS003440139164IPR000679Zinc finger, GATA-type
PfamPF003204.5E-17139172IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSFDLNNELD HNHHHLFNSN IHQPSSSYSI LFNQNQDQGR SYSLEPSHIQ SDDHLEVEKF  60
VSSNGSWDHQ EMKKEDENED YKDEDSTSLK WMPSKKRIIH KMMEDQRGSK NKFEKEKLLG  120
FDYSSNNNSS NNNITIRVCS DCHTTKTPLW RSGPTGPKSL CNACGIRQRK ARRALAAAAS  180
ANGETLVAAE KPNLKEKKLQ IKRKRSKIDQ CAPHLKSKGK IGNKCLTFED LIASLSNNLT  240
DPHQVFPQDE KEAAILLMAL SYGLLHGFPS NGYLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595135.24e-98putative GATA transcription factor 22
TrEMBLA0A2K3LIP21e-148A0A2K3LIP2_TRIPR; GATA transcription factor 22-like protein
STRINGAES653861e-97(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-17cytokinin-responsive gata factor 1