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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 25797.1 Da PI: 10.2228 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 171 | 193 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++L+ H+ + H Tp57577_TGAC_v2_mRNA36465 171 ACDQCGEVFPKIESLELHQAVrH 193 69*****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.767 | 170 | 198 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 170 | 193 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
LVNQQQKQEQ KQKQKQKPKP KQKPPSSWDQ IKNILTCKQI EGSKVHDPSK PNNNNGYSKL 60 GSSCSSICSF RDVVHGNTRV VHRSDNSSPE SSILGQETSL LKRKPVTASS SSSSTRSASC 120 SGKSSNGGRN YTTSSSSSSR RMQFRKLSGC YECHMIVDPS RLPIPRSTVC ACDQCGEVFP 180 KIESLELHQA VRHAVSELGL EDSGRNIVEI IFKSRIADEI KQIMETLSRS RSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36465 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149606 | 0.0 | BT149606.1 Medicago truncatula clone JCVI-FLMt-20P4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589472.1 | 1e-120 | uncharacterized protein LOC11428088 | ||||
TrEMBL | G7I760 | 1e-118 | G7I760_MEDTR; C2H2-like zinc finger protein | ||||
STRING | AES59723 | 1e-119 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 7e-66 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36465 |