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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA36413 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
MYB_related |
| Protein Properties |
Length: 473aa MW: 53885.7 Da PI: 5.6428 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA36413 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 27 | 1.1e-08 | 353 | 400 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
WTt E +l d++ ++G g+W+ I r + Rt+ +++++w+++l
Tp57577_TGAC_v2_mRNA36413 353 WTTSEVTKLMDGISEYGVGRWTDIQRFLFsaaGYRTPTDIRDKWRNLL 400
****************************999999************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MDRDEYLRKC SNMKCQRVQV EGSYVPSLQD DEMEVEHLFE EPRNDYVSLD GSLASYTALN 60
DKDDLQLEVL DDFLDDGFLD DVEIDNFEGT DGFSDARGGY FLDFDFAKVE LLGSGANEDS 120
PVENSNSESQ SPGVSGSSTV GGISESTKVL PNSTQSKCKI ESLDETGPHD TNGIIRNNPS 180
QPSNVDCMYN ISLDIQHLHE LNNGYPLAGG ILSCKKENVT VENCQSAPPR EKRFRKPTQR 240
YIEESSTLKS KEKVRTTGAK KKRRSVSCSE LHTRTKRLEN IPIEKFSDNI PIEKFSDSDS 300
DVTLSELQHC MKYPKKEKLD YDYESFSSEE SSDEELTPKR CRTKDRRKNQ RMWTTSEVTK 360
LMDGISEYGV GRWTDIQRFL FSAAGYRTPT DIRDKWRNLL RACSSQRFNK KEEGEQDDEN 420
SPRTLPLSVA SRVLELSKIH PYPNRRNKKR SFPGIANQSN RSRRNVRRKK CT*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 259 | 263 | KKKRR |
| 2 | 336 | 340 | TPKRC |
| 3 | 444 | 450 | RRNKKRS |
| 4 | 447 | 469 | KKRSFPGIANQSNRSRRNVRRKK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC153725 | 1e-169 | AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence. |
| GenBank | AC183303 | 1e-169 | AC183303.12 Medicago truncatula clone mth2-159e4, complete sequence. |
