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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 84aa MW: 9953.42 Da PI: 9.984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31 | 7.3e-10 | 1 | 23 | 106 | 128 |
NAM 106 LvfykgrapkgektdWvmheyrl 128 Lvfykgr pkg kt+W+mheyrl Tp57577_TGAC_v2_mRNA36406 1 LVFYKGRPPKGIKTNWIMHEYRL 23 8********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.965 | 1 | 50 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-15 | 1 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
LVFYKGRPPK GIKTNWIMHE YRLIGSQKQT SKHIGSMRLD DWVLCRIYKK KQVGKTLQQK 60 EEYSTLQFND STITNNDGEQ EMMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-17 | 1 | 51 | 120 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-17 | 1 | 51 | 120 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-17 | 1 | 51 | 120 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-17 | 1 | 51 | 120 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-17 | 1 | 51 | 123 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-17 | 1 | 51 | 120 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-17 | 1 | 51 | 120 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36406 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM237304 | 5e-85 | HM237304.1 Medicago sativa isolate A NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607731.1 | 2e-48 | NAC transcription factor 29 | ||||
Refseq | XP_012572610.1 | 1e-48 | NAC transcription factor 29 | ||||
Swissprot | K4BWV2 | 6e-29 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | D9J0A6 | 3e-48 | D9J0A6_MEDSA; NAC protein | ||||
STRING | AES89928 | 6e-48 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17306 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-28 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36406 |
Publications ? help Back to Top | |||
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