PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36204

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 839aa MW: 92484.9 Da PI: 6.607

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36204	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Tp57577_TGAC_v2_mRNA36204 19 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP
2	START	175.6	3e-55	160	368	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++v+ Tp57577_TGAC_v2_mRNA36204 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVVNVL 242 7899****************************************************.8888888888************* PP CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163 ++ g+++l +++l+a+++l+p Rdf+ +Ry+ ++g++vi+++S+ ++q+ p+ +++vRa +lpSg+li+p+++g+s Tp57577_TGAC_v2_mRNA36204 243 PTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVVEDGSLVICERSLKNTQNGPSmppVPHFVRADMLPSGYLIRPCEGGGSI 326 9999**********************************************999999******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++v+h+dl+ ++++++lr+l++s ++ ++kt++a+l+++++ Tp57577_TGAC_v2_mRNA36204 327 IHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQ 368 ***********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-18	6	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.435	14	78	IPR001356	Homeobox domain
SMART	SM00389	1.5E-15	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-16	19	80	IPR009057	Homeodomain-like
CDD	cd00086	6.77E-17	19	79	No hit	No description
Pfam	PF00046	4.4E-16	20	77	IPR001356	Homeobox domain
CDD	cd14686	2.21E-4	71	110	No hit	No description
PROSITE profile	PS50848	24.946	150	350	IPR002913	START domain
CDD	cd08875	3.27E-79	154	369	No hit	No description
SMART	SM00234	1.1E-40	159	369	IPR002913	START domain
SuperFamily	SSF55961	2.88E-38	159	369	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.1E-22	159	365	IPR023393	START-like domain
Pfam	PF01852	6.1E-53	160	368	IPR002913	START domain
Pfam	PF08670	6.5E-50	695	837	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MSMVCKDGSN NKHLMDNGKY VRYTPEQVEA LERLYHDCPK PSSIRRQQLI RECPILSNIE 60 PRQIKVWFQN RRCREKQRKE SFRLQGVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYFR 120 QNTQNATKDT SCESVVTSGQ HNMTSQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EILKDRPLWF RDCRAVDVVN 240 VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVVED GSLVICERSL KNTQNGPSMP 300 PVPHFVRADM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES PTVLAQKTTM 360 AALRHLRQIS HEVSQPNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WTMMGNDGVD 420 DVTILVNSSP DKLMGLNLSF GNGFPSVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNMDAYTAA AIKVGPCSLT GSRIGNYGGQ VILPLAHTIE HEEFLEVIKL DGVAHSPEDT 540 MLARELFLLQ LCSGMDENAI GTCAELIFAP IDASFADDAP LLPSGFRIIP LESGKEASSP 600 NRTLDLASAL DVGGPTGNRA SSDNAGNSGC VRSVMTIAFE FAFESHMQEN VACMARQYVR 660 SIISSVQRVA LALSPSHLSS HAGMRSPLGT PEAQTLAHWI CNSYRCYLGV DLLKSNNEGK 720 EPILKSLWHH SDAVLCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKTL 780 FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERAIAWKVLN DEQNAHCICF MFVNWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MSMVCKDGSN NKHLMDNGKY VRYTPEQVEA LERLYHDCPK PSSIRRQQLI RECPILSNIE  60
PRQIKVWFQN RRCREKQRKE SFRLQGVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYFR  120
QNTQNATKDT SCESVVTSGQ HNMTSQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EILKDRPLWF RDCRAVDVVN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVVED GSLVICERSL KNTQNGPSMP  300
PVPHFVRADM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES PTVLAQKTTM  360
AALRHLRQIS HEVSQPNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WTMMGNDGVD  420
DVTILVNSSP DKLMGLNLSF GNGFPSVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNMDAYTAA AIKVGPCSLT GSRIGNYGGQ VILPLAHTIE HEEFLEVIKL DGVAHSPEDT  540
MLARELFLLQ LCSGMDENAI GTCAELIFAP IDASFADDAP LLPSGFRIIP LESGKEASSP  600
NRTLDLASAL DVGGPTGNRA SSDNAGNSGC VRSVMTIAFE FAFESHMQEN VACMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGMRSPLGT PEAQTLAHWI CNSYRCYLGV DLLKSNNEGK  720
EPILKSLWHH SDAVLCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERAIAWKVLN DEQNAHCICF MFVNWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36204

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510297.1	0.0	homeobox-leucine zipper protein ATHB-15-like isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A2K3NLF4	0.0	A0A2K3NLF4_TRIPR; Homeobox-leucine zipper protein ATHB-15-like
STRING	AET01481	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36204

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]