PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 27979.8 Da PI: 6.117 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.7 | 6.8e-07 | 193 | 240 | 26 | 73 |
FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 ++i + f C eg+ + + + +ke+r+++++r++Cka+l+++++k+ Tp57577_TGAC_v2_mRNA36167 193 ENIRLACFFCHHEGSVSLKIIDPSKEQRKKESSRCECKAHLRISLQKS 240 5677788*************999*********************9984 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
LPSYAAAGGI GDIMRSNYGM PWNSWKQIDI NMRDLWFGEF KKKFNFCPPD DSWAGKNFER 60 RGAAVMKNNL NKPSFPTRRL CDGFLALHHP LLWSIFGGLL HVSSSAVDFH GCFVLPSAVF 120 PSSSEMINNI MDSANVIDMN FDLNECLIKD ISHENGNSTI IVEHFDHAIV ANDVLEVDDI 180 ESFEKENPVP FSENIRLACF FCHHEGSVSL KIIDPSKEQR KKESSRCECK AHLRISLQKS 240 HDIYPSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36167 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-06 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36167 |