PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36076
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 448aa    MW: 49961.1 Da    PI: 9.3117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36076genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057294123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA36076 72 FVCEICNKGFQRDQNLQLHRRGH 94
                               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.92E-77194No hitNo description
Gene3DG3DSA:3.30.160.601.4E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177294IPR015880Zinc finger, C2H2-like
PfamPF121717.0E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035588114144IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.92E-7144169No hitNo description
SMARTSM00355190149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MFPALMSNST SFSQETTLSS NTLPRLNHVV STINSSQQPQ KTKKKRNLPG NPDPDAEVIA  60
LSPRTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNNKDVIK KRAYVCPEPS  120
CVHHNPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKIYAV HSDWKAHSKT CGTREYKCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARMSAN IQLSTTNPLS QSLFLFPNQQ SQITWDPPQQ  240
NPNPNTHTSS LPHHNMIKHE SHQNFHNINL SSSPLPSFLH DHPNNPNYKT NIMMTSSPFH  300
VSTQQPSSTS AMSPHLSATA LLQQAATVGA TAITGGQPVH LPRQLSMSEF GSVTQIDSVD  360
HYINNMRDRN LKNDDLTRDF LGLTNGGGNG GAVDVTIDMK DMLTFTGGLE YHGHQPHENM  420
TMFRQSQQQG FGFLGTTATV PESWGNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36145209367Zinc finger protein JACKDAW
5b3h_F3e-36145209367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1560120.0AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence.
GenBankAC1662860.0AC166286.17 Medicago truncatula clone mth2-173c1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635863.10.0protein indeterminate-domain 12
SwissprotO227591e-122IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A2K3PMK50.0A0A2K3PMK5_TRIPR; Zinc finger protein NUTCRACKER-like
STRINGAES608250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-112indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]