PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35998
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 644aa    MW: 71145.9 Da    PI: 7.9248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35998genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000874466123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C+k+Fs    L  Hi +H
  Tp57577_TGAC_v2_mRNA35998 44 YECTTCNKVFSKFQALGGHITSH 66
                               99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-643109No hitNo description
PfamPF139121.6E-94368IPR007087Zinc finger, C2H2
SMARTSM003550.0784466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1594471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SMARTSM00355187109IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-987111IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF528331.59E-24326471IPR012336Thioredoxin-like fold
SMARTSM005942.8E-46330457IPR006577UAS
CDDcd029585.71E-34347462No hitNo description
SuperFamilySSF542361.21E-24524640IPR029071Ubiquitin-related domain
SMARTSM001662.2E-7559641IPR001012UBX domain
Gene3DG3DSA:3.10.20.902.8E-24559640No hitNo description
PROSITE profilePS5003319.837561639IPR001012UBX domain
PfamPF007891.5E-20561640IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEASLEQHQL SLGSREHTNY IIKGKGSKLV IRGTGARACY YNVYECTTCN KVFSKFQALG  60
GHITSHKKLN ALEIAHDDSN NNRYKLHECT ICGSEYTTGQ ALGGHMTCHR APVRSATSLK  120
PMALKPYKPR KKRHVLPLNF DLNLPAAPGD EKRESKFAFA RINKSCLICI GLGEFSLPWI  180
LGNNAACGGI LRGCFIFAFA ARKHYLSVLE AELWGFQCFK NWTGIDFVFF KLADSNFEDE  240
NDFSSKFEEP PLPPPPPGLA WKLIKLPISV ISGSLGLVSG AIGLGLWAAG GVLSYSLGFV  300
GLGSGSSSSS ASGSASPLVS VSAATTEAMQ FVAAFERDYG TTTKPNFVSE GFMDALQRSR  360
NSFKLLFVYL HSPDHPDTPL FCRRTLCSDV FVEFVNQNFV CWGGSIRASE GFKMSNSLKA  420
SRFPFCALVM AATNQRIALL QQVEGPKSPE EMLVVLQRVL EESSPVLVAA RLDAEERRNN  480
ARLREEQDAA YRAALEADQA RERQRREEEE RFAREAAEAE RKLKEEEEAR ERAAQEAAEK  540
QAALAKLREE KAQSLGEEPE KGPNVTQVLV RFPNGVRKDR RFNSTVTIQS LYDYVDSLGL  600
LEAESYSLVS NFPRVVYGQE KLTQSLKEAG LHPQASLFVE LSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35998
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-72AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468859.10.0plant UBX domain-containing protein 10
SwissprotQ9M0N10.0PUX10_ARATH; Plant UBX domain-containing protein 10
TrEMBLA0A2Z6NG280.0A0A2Z6NG28_TRISU; Uncharacterized protein
STRINGXP_004495502.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-24C2H2 family protein