PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3592
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 308aa    MW: 35689.1 Da    PI: 9.9283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3592genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-1559106148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT eEd+ll+ +++++G g W++ +++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA3592  59 KGAWTYEEDKLLKSCIRKYGEGKWHLAPQRAGLNRCRKSCRLRWLNYL 106
                               79********************************************97 PP
2Myb_DNA-binding38.52.6e-12113157248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +++++E +  ++++k+lG++ W++Ia +++ gRt + +k++w+++l
  Tp57577_TGAC_v2_mRNA3592 113 ESFSEDEVDMMLRLHKLLGNR-WSLIAGRLP-GRTSNYVKNYWHTHL 157
                               689******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.55254110IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2055109IPR009057Homeodomain-like
SuperFamilySSF466894.39E-2756153IPR009057Homeodomain-like
SMARTSM007174.8E-1158108IPR001005SANT/Myb domain
PfamPF002493.0E-1459106IPR001005SANT/Myb domain
CDDcd001671.18E-861106No hitNo description
Gene3DG3DSA:1.10.10.602.1E-21110161IPR009057Homeodomain-like
SMARTSM007173.0E-11111159IPR001005SANT/Myb domain
PROSITE profilePS5129417.469111161IPR017930Myb domain
PfamPF002499.9E-11112157IPR001005SANT/Myb domain
CDDcd001677.21E-8114157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVSSTVPLPL FVSYPTFSFK SMIAIEKSHI FIFMCGQLRK TYRDQVHMEK SKTRSGVRKG  60
AWTYEEDKLL KSCIRKYGEG KWHLAPQRAG LNRCRKSCRL RWLNYLNPTI NKESFSEDEV  120
DMMLRLHKLL GNRWSLIAGR LPGRTSNYVK NYWHTHLRKK VISKKLEENK EKEKLKETVK  180
PHEIIKPKPR TFSANSPWLN RKYINFVTPI VAVSTKDGTV AKDSDIENTM IPINGDVDSA  240
AQPYTGNSTT MWWENLLNVS NDKIGLCSLL QEEDSKYVNF LSEVPNVNDC NWKSKIYEFE  300
SILDILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24591617108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995620.0KM199562.1 Trifolium repens isolate Tr_RED_LEAF_DIFFUSEa R2R3 MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616359.11e-131transcription factor MYB113
SwissprotQ9FNV96e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A097J9Z11e-161A0A097J9Z1_9FABA; R2R3 MYB protein
STRINGAES993171e-130(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]