PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35723
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family E2F/DP
Protein Properties Length: 391aa    MW: 43340.8 Da    PI: 6.5164
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35723genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25e-27112177171
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                r+++sL+llt+kf++l++ +++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  Tp57577_TGAC_v2_mRNA35723 112 RYDSSLGLLTKKFVTLIQDAKDGTLDLNKTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 177
                                6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-29109178IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-17112175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-35112177IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-25114177IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.31E-24188294No hitNo description
CDDcd146603.55E-32188295No hitNo description
PfamPF164211.9E-22193292IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSIPSENQIQ HFPQFNFNLL HSPSPPNPSP FPVMHPCQSP RNEINNVNLN TGSNAEAFPS  60
QSNIVNLPPP IQTEPVQRGK NNGKSKVPRN GKSAAQNSNT EAMNSAAVNN CRYDSSLGLL  120
TKKFVTLIQD AKDGTLDLNK TAEVLEVQKR RIYDITNVLE GIGLIEKTSK NHIRWKGCDG  180
LGPRELEDQV NALQAEVKSL YAKECKLEEC ISERKELIRN LEEGKNTGKY LFLTKEDILT  240
LPCFQNKELI AIKAPKASFI EVPDPDEELD FHQRQYRMIV RSATGPINLY LLNKHDSKFE  300
GVSVKQANLE DPSRSSNHCR MEGVGLLEGQ GLQKNPSGSL SFLGSEAFGI QQITPTHLDV  360
DGDYWFKSDP KVGLTELWGT SAVGSDRQTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24111178674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35723
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633944.10.0LOW QUALITY PROTEIN: transcription factor E2FC
SwissprotQ9FV705e-91E2FC_ARATH; Transcription factor E2FC
TrEMBLA0A2K3NW980.0A0A2K3NW98_TRIPR; Transcription factor E2FC-like protein
STRINGXP_004500945.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.22e-92E2F/DP family protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  3. Huntley R, et al.
    The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.
    Plant Mol. Biol., 1998. 37(1): p. 155-69
    [PMID:9620273]