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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19891.4 Da PI: 10.6769 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 15 | 44 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+W eEd+ll+d+++++G g W++++++ Tp57577_TGAC_v2_mRNA3558 15 KGAWMYEEDKLLKDCINKYGEGKWHLVPQR 44 799************************987 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6.1e-14 | 91 | 135 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ ++E + +++++k+lG++ W++Ia +++ gRt +++k++w+++l Tp57577_TGAC_v2_mRNA3558 91 ESFAEDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWHTHL 135 6778999**************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.222 | 10 | 84 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 10 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.52E-23 | 13 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-7 | 14 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-10 | 15 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-4 | 21 | 84 | No hit | No description |
PROSITE profile | PS51294 | 23.296 | 85 | 139 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 87 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 90 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-8 | 95 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MIGKLHMEKT RSVRKGAWMY EEDKLLKDCI NKYGEGKWHL VPQRAVKVIN YVVFRSKCKL 60 NHALHLTGLN RCRKSCRLRW LNYLSPNIKR ESFAEDEVDM IIRLHKLLGN RWSLIAGRLP 120 GRTSNDVKNY WHTHLQKKMV CRKLEEKKEK DNHKETIKPH VVIKPQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-23 | 15 | 139 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ199996 | 3e-85 | FJ199996.1 Medicago truncatula MYB transcription factor LAP2 mRNA, complete cds. | |||
GenBank | JQ690285 | 3e-85 | JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616362.3 | 2e-71 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 1e-51 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A097J9V1 | 4e-71 | A0A097J9V1_TRIRP; R2R3 MYB protein | ||||
STRING | AES99320 | 4e-71 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-54 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3558 |
Publications ? help Back to Top | |||
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