PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35565

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 279aa MW: 30332.6 Da PI: 10.1188

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35565	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	73	133	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+n+k++ Tp57577_TGAC_v2_mRNA35565 73 PEQQLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNNKKN 133 6899****************************************************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-32	57	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MIFSSIQGYV DPPNWHNQQP NQHQQNGSDN IQLLPPLPPQ VGGSTGASGG GTMGSIRPSS 60 MAERARSAKL PPPEQQLKCP RCDSTNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV 120 PVGGGCRRNN KKNKRSRSKS PNSTNSHEKQ TSSSSAIPSH HELIGHQLPQ TITNLPFMAS 180 MQNHLSRYVV GNVNMGLGLR EIQEQQQQTD HMGFQIGVGN GNGNSSVTVS AAAAGGGVGV 240 DQWRNLQQFP FLNTFESTSG GNNSFPFQGE SIEATSSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35565

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456108.1	1e-147	dof zinc finger protein DOF3.6
TrEMBL	A0A2K3N8E6	1e-156	A0A2K3N8E6_TRIPR; Dof zinc finger protein
STRING	XP_004505871.1	1e-125	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35565