PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35519
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 91aa    MW: 10967.1 Da    PI: 11.3087
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35519genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1697.4e-2247873676
                       CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76
                                gsl+L++rk++ryfrkDG++w+k+kdgktvrE+he+LK+ 
  Tp57577_TGAC_v2_mRNA35519 47 GGSLLLFDRKVTRYFRKDGHNWRKQKDGKTVREAHERLKIR 87
                               59*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143729.383190IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-52790IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-164787IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
LYQKHNIDGY VQLKFAKFSL IRPTFRLLLN LHICLQFLIM VFWITLGGSL LLFDRKVTRY  60
FRKDGHNWRK QKDGKTVREA HERLKIRIHK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437208.12e-20PREDICTED: calmodulin-binding transcription activator 3 isoform X2
RefseqXP_012437209.12e-20PREDICTED: calmodulin-binding transcription activator 3 isoform X2
RefseqXP_012437210.12e-20PREDICTED: calmodulin-binding transcription activator 3 isoform X2
RefseqXP_012437211.12e-20PREDICTED: calmodulin-binding transcription activator 3 isoform X2
RefseqXP_016738097.12e-20PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
RefseqXP_016738099.12e-20PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
RefseqXP_016738100.12e-20PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2G5E9C52e-25A0A2G5E9C5_AQUCA; Uncharacterized protein
STRINGEMJ093742e-18(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3176222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.17e-21ethylene induced calmodulin binding protein