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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA35232 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
MYB |
Protein Properties |
Length: 438aa MW: 48558.7 Da PI: 6.6718 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA35232 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 130 | 175 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++
Tp57577_TGAC_v2_mRNA35232 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 175
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 182 | 225 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+
Tp57577_TGAC_v2_mRNA35232 182 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 225
678*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MKAWPAIQSS SSTTYSSPSM GMVYANMDSL SLNYTAAAAA SSSSSQDFYV SKEGTDNTTA 60 KWSLPFMRKC CIARNFEENQ NSDEVGEGNG SDSGDDGIGE NNGDKINPNE NNYVSGKEVI 120 DTGHSKLCAR GHWRPAEDSK LKELVALYGP QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI 180 NRRAFSEEEE ERLMQAHRIY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR 240 RRLNQSVYRR IEDNAANFVS RDIATGMMEP VPSPYCINLP NGYNITTSFP FSSFHGVIDG 300 GVAIDCGLNG SAHFSGSKEA ISSNKQTPSS PFGLIAQQTP LDFISGGIRN DHYSQMKCWD 360 NQPTGFYHQY PQYMMQMQQQ NNNFYSFSSN STTAATSTTQ ILGSEVSLSS VAATEDHNPP 420 PSDTIPFIDF LGVGATT*
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Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC140030 | 1e-141 | AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence. |